This document compares the results of at least 2 CASAL model configurations (base and at least one sensitivity) and up to 8 Casal2 model configurations (3 BetaDiff, 2 CppAD, and 3 ADOL-C).
The CASAL model sensitivity 1 has a smaller tolerance value than the CASAL base model (1e-6 vs. 2e-3).
The Casal2 ADOL-C and BetaDiff low tolerance models have a smaller tolerance value than the CASAL base model (1e-6 vs. 2e-3). The Casal2 CppAD models have a tolerance value of 1e-9.
## [1] "Mon May 11 14:07:59 2020"
## R version 3.6.3 (2020-02-29)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Debian GNU/Linux bullseye/sid
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
##
## locale:
## [1] LC_CTYPE=en_NZ.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_NZ.UTF-8 LC_COLLATE=en_NZ.UTF-8
## [5] LC_MONETARY=en_NZ.UTF-8 LC_MESSAGES=en_NZ.UTF-8
## [7] LC_PAPER=en_NZ.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] casal2_1.0 casal_2.30 devtools_2.3.0 usethis_1.6.1 rlist_0.4.6.1
## [6] ggplot2_3.3.0
##
## loaded via a namespace (and not attached):
## [1] Rcpp_1.0.4.6 pillar_1.4.4 compiler_3.6.3 remotes_2.1.1
## [5] prettyunits_1.1.1 tools_3.6.3 testthat_2.3.2 pkgload_1.0.2
## [9] pkgbuild_1.0.8 digest_0.6.25 memoise_1.1.0 evaluate_0.14
## [13] lifecycle_0.2.0 tibble_3.0.1 gtable_0.3.0 pkgconfig_2.0.3
## [17] rlang_0.4.6 cli_2.0.2 yaml_2.2.1 xfun_0.13
## [21] withr_2.2.0 stringr_1.4.0 dplyr_0.8.5 knitr_1.28
## [25] desc_1.2.0 vctrs_0.2.4 fs_1.4.1 rprojroot_1.3-2
## [29] grid_3.6.3 tidyselect_1.0.0 glue_1.4.0 data.table_1.12.8
## [33] R6_2.4.1 processx_3.4.2 fansi_0.4.1 rmarkdown_2.1
## [37] sessioninfo_1.1.1 callr_3.4.3 purrr_0.3.4 magrittr_1.5
## [41] backports_1.1.6 ps_1.3.3 scales_1.1.0 ellipsis_0.3.0
## [45] htmltools_0.4.0 assertthat_0.2.1 colorspace_1.4-1 stringi_1.4.6
## [49] munsell_0.5.0 crayon_1.3.4
# read in CASAL MPD results
cas_mpd_filename <- file.path(base_dir, 'CASAL', mpd_run)
cas_mpd <- casal::extract.mpd(cas_mpd_filename)
cas_corr <- casal::extract.correlation.matrix(cas_mpd_filename)
cas_conv <- get_convergence_information(cas_mpd_filename)
c1_quant <- cas_mpd$quantities
cas_mpd_sens1_filename <- file.path(base_dir, 'CASAL_sens1', mpd_run)
cas_mpd_sens1 <- casal::extract.mpd(cas_mpd_sens1_filename)
cas_sens1_corr <- casal::extract.correlation.matrix(cas_mpd_sens1_filename)
cas_sens1_conv <- get_convergence_information(cas_mpd_sens1_filename)
c1_sens1_quant <- cas_mpd_sens1$quantities
C2_subdir <- c('betadiff_casal_flags_on',
'betadiff_casal_flags_off',
'betadiff_casal_flags_on_low_tol',
'cppad_casal_flags_on',
'cppad_casal_flags_off',
'adolc_casal_flags_on',
'adolc_casal_flags_off',
'adolc_casal_flags_on_low_tol')
# find the non-zero-sized parameter estimate files for the C2 models
C2_subdir <- unlist(sapply(C2_subdir, function(c_dir) if ( file.access(file.path(base_dir, 'Casal2', c_dir, params_est), 4) == 0 &
file.size(file.path(base_dir, 'Casal2', c_dir, params_est)) > 0 )
{ return (c_dir) }, USE.NAMES=FALSE ))
num_C2_models <- length(C2_subdir)
C2_color <- c('blue', 'green3', 'red', 'gold', 'magenta', 'cyan', 'brown', 'orange')
# read in Casal2 MPD results
cas2_mpd <- list()
cas2_corr <- list()
cas2_conv <- list()
for (c in 1:num_C2_models)
{
cas2_mpd_filename <- file.path(base_dir, 'Casal2', C2_subdir[c], mpd_run)
cas2_mpd[[c]] <- casal2::extract.mpd(cas2_mpd_filename)
cas2_corr[[c]] <- casal2::extract.correlation.matrix(mpd_out, file.path(base_dir, 'Casal2', C2_subdir[c]))
cas2_conv[[c]] <- get_convergence_information(cas2_mpd_filename)
}
Tables of parameter estimates and objective function components for the CASAL and Casal2 model MPD results
| rownames | Base_Model | Sensitivity_1 | Percent_Diff |
| q[tan_sum].q | 0.09128 | 0.09105 | 0.251 |
| q[tan_aut].q | 0.12625 | 0.12592 | 0.258 |
| initialization.B0 | 308952.00000 | 310671.00000 | -0.556 |
| natural_mortality.ogive_all1 | 12.49210 | 12.98210 | -3.922 |
| natural_mortality.ogive_all2 | 0.13271 | 0.12782 | 3.680 |
| natural_mortality.ogive_all3 | 0.38192 | 0.44986 | -17.790 |
| natural_mortality.ogive_all4 | 0.35058 | 0.35395 | -0.960 |
| selectivity[surveysum_sel].male1 | 4.73847 | 4.88131 | -3.014 |
| selectivity[surveysum_sel].male2 | 1.74997 | 1.77236 | -1.279 |
| selectivity[surveysum_sel].male3 | 0.61001 | 0.60162 | 1.375 |
| selectivity[surveysum_sel].female1 | 5.46022 | 5.61310 | -2.800 |
| selectivity[surveysum_sel].female2 | 2.20584 | 2.21537 | -0.432 |
| selectivity[surveyaut_sel].male1 | 5.50416 | 5.64383 | -2.538 |
| selectivity[surveyaut_sel].male2 | 2.31427 | 2.29812 | 0.698 |
| selectivity[surveyaut_sel].male3 | 0.93922 | 0.93314 | 0.648 |
| selectivity[surveyaut_sel].female1 | 5.92021 | 6.06245 | -2.403 |
| selectivity[surveyaut_sel].female2 | 2.77781 | 2.73777 | 1.441 |
| selectivity[trawl_sel].male1 | 8.36987 | 8.40438 | -0.412 |
| selectivity[trawl_sel].male2 | 1.97182 | 1.94699 | 1.259 |
| selectivity[trawl_sel].male3 | 61.64930 | 200.00000 | -224.416 |
| selectivity[trawl_sel].male4 | 1.04125 | 1.02062 | 1.981 |
| selectivity[trawl_sel].female1 | 8.66384 | 8.74135 | -0.895 |
| selectivity[trawl_sel].female2 | 2.09989 | 2.08792 | 0.570 |
| selectivity[trawl_sel].female3 | 43.31110 | 40.38180 | 6.763 |
| selectivity[line_home_sel].male1 | 11.45120 | 8.58352 | 25.043 |
| selectivity[line_home_sel].male2 | 8.59023 | 4.54774 | 47.059 |
| selectivity[line_home_sel].male3 | 0.38005 | 0.26910 | 29.193 |
| selectivity[line_home_sel].female1 | 9.61555 | 9.53091 | 0.880 |
| selectivity[line_home_sel].female2 | 3.87496 | 3.68517 | 4.898 |
| selectivity[line_spawn_sel].male1 | 18.29980 | 14.03630 | 23.298 |
| selectivity[line_spawn_sel].male2 | 13.66550 | 10.01380 | 26.722 |
| selectivity[line_spawn_sel].male3 | 1.86791 | 1.17322 | 37.191 |
| selectivity[line_spawn_sel].female1 | 9.74583 | 9.71344 | 0.332 |
| selectivity[line_spawn_sel].female2 | 3.00787 | 2.89355 | 3.801 |
| recruitment.YCS1 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS2 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS3 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS4 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS5 | 0.48497 | 0.46622 | 3.866 |
| recruitment.YCS6 | 0.45827 | 0.45012 | 1.779 |
| recruitment.YCS7 | 0.56856 | 0.56472 | 0.676 |
| recruitment.YCS8 | 0.56672 | 0.56673 | -0.001 |
| recruitment.YCS9 | 0.48607 | 0.49069 | -0.950 |
| recruitment.YCS10 | 0.55503 | 0.56723 | -2.198 |
| recruitment.YCS11 | 0.56325 | 0.57884 | -2.767 |
| recruitment.YCS12 | 0.68756 | 0.71085 | -3.387 |
| recruitment.YCS13 | 0.62029 | 0.63612 | -2.551 |
| recruitment.YCS14 | 0.79057 | 0.80842 | -2.257 |
| recruitment.YCS15 | 0.46428 | 0.46926 | -1.073 |
| recruitment.YCS16 | 0.70075 | 0.70727 | -0.929 |
| recruitment.YCS17 | 0.41010 | 0.41046 | -0.087 |
| recruitment.YCS18 | 0.51501 | 0.51452 | 0.096 |
| recruitment.YCS19 | 0.34165 | 0.34217 | -0.154 |
| recruitment.YCS20 | 0.34829 | 0.34726 | 0.295 |
| recruitment.YCS21 | 0.43607 | 0.43820 | -0.487 |
| recruitment.YCS22 | 0.48058 | 0.47500 | 1.162 |
| recruitment.YCS23 | 0.45216 | 0.45129 | 0.192 |
| recruitment.YCS24 | 0.49168 | 0.49479 | -0.631 |
| recruitment.YCS25 | 0.46910 | 0.47066 | -0.334 |
| recruitment.YCS26 | 0.79927 | 0.80495 | -0.710 |
| recruitment.YCS27 | 0.79012 | 0.79211 | -0.251 |
| recruitment.YCS28 | 0.82606 | 0.83114 | -0.615 |
| recruitment.YCS29 | 0.70756 | 0.71251 | -0.699 |
| recruitment.YCS30 | 0.55170 | 0.55428 | -0.468 |
| recruitment.YCS31 | 0.47520 | 0.47677 | -0.331 |
| recruitment.YCS32 | 0.46170 | 0.46138 | 0.070 |
| recruitment.YCS33 | 0.55496 | 0.55435 | 0.110 |
| recruitment.YCS34 | 0.54666 | 0.54206 | 0.841 |
| recruitment.YCS35 | 0.48323 | 0.48254 | 0.143 |
| recruitment.YCS36 | 0.55016 | 0.54989 | 0.049 |
| recruitment.YCS37 | 0.61527 | 0.61581 | -0.087 |
| recruitment.YCS38 | 0.77573 | 0.77473 | 0.129 |
| recruitment.YCS39 | 0.63109 | 0.63059 | 0.080 |
| recruitment.YCS40 | 0.77552 | 0.77349 | 0.262 |
| recruitment.YCS41 | 0.64292 | 0.63935 | 0.555 |
| recruitment.YCS42 | 0.70666 | 0.69938 | 1.030 |
| recruitment.YCS43 | 0.65426 | 0.64860 | 0.864 |
| recruitment.YCS44 | 0.50999 | 0.50618 | 0.746 |
| recruitment.YCS45 | 0.58619 | 0.58729 | -0.186 |
| recruitment.YCS46 | 0.60348 | 0.58927 | 2.355 |
| recruitment.YCS47 | 0.57681 | 0.57449 | 0.403 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | cppad_casal_flags_on | cppad_casal_flags_off | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
| process[Recruitment].b0 | 308529.000 | 308529.000 | 310577.000 | 310576.000 | 310576.000 | 308529.000 | 308529.000 | 310577.000 |
| catchability[summerTANq].q | 0.091 | 0.091 | 0.091 | 0.091 | 0.091 | 0.091 | 0.091 | 0.091 |
| catchability[autumnTANq].q | 0.126 | 0.126 | 0.126 | 0.126 | 0.126 | 0.126 | 0.126 | 0.126 |
| selectivity[M_all].x0 | 12.496 | 12.496 | 12.984 | 12.984 | 12.984 | 12.496 | 12.496 | 12.984 |
| selectivity[M_all].y0 | 0.133 | 0.133 | 0.128 | 0.128 | 0.128 | 0.133 | 0.133 | 0.128 |
| selectivity[M_all].y1 | 0.383 | 0.383 | 0.447 | 0.447 | 0.447 | 0.383 | 0.383 | 0.447 |
| selectivity[M_all].y2 | 0.351 | 0.351 | 0.354 | 0.354 | 0.354 | 0.351 | 0.351 | 0.354 |
| selectivity[summerTANSel_m].a50 | 4.740 | 4.740 | 4.876 | 4.876 | 4.876 | 4.740 | 4.740 | 4.876 |
| selectivity[summerTANSel_m].ato95 | 1.745 | 1.745 | 1.770 | 1.770 | 1.770 | 1.745 | 1.745 | 1.770 |
| selectivity[summerTANSel_m].alpha | 0.610 | 0.610 | 0.602 | 0.602 | 0.602 | 0.610 | 0.610 | 0.602 |
| selectivity[summerTANSel_f].a50 | 5.461 | 5.461 | 5.608 | 5.608 | 5.608 | 5.461 | 5.461 | 5.608 |
| selectivity[summerTANSel_f].ato95 | 2.203 | 2.203 | 2.214 | 2.214 | 2.214 | 2.203 | 2.203 | 2.214 |
| selectivity[autumnTANSel_m].a50 | 5.510 | 5.510 | 5.640 | 5.640 | 5.640 | 5.510 | 5.510 | 5.640 |
| selectivity[autumnTANSel_m].ato95 | 2.313 | 2.313 | 2.298 | 2.298 | 2.298 | 2.313 | 2.313 | 2.298 |
| selectivity[autumnTANSel_m].alpha | 0.942 | 0.942 | 0.933 | 0.933 | 0.933 | 0.942 | 0.942 | 0.933 |
| selectivity[autumnTANSel_f].a50 | 5.916 | 5.916 | 6.058 | 6.058 | 6.058 | 5.916 | 5.916 | 6.058 |
| selectivity[autumnTANSel_f].ato95 | 2.770 | 2.770 | 2.738 | 2.738 | 2.738 | 2.770 | 2.770 | 2.738 |
| selectivity[trwlFSel_m].mu | 8.369 | 8.369 | 8.402 | 8.402 | 8.402 | 8.369 | 8.369 | 8.402 |
| selectivity[trwlFSel_m].sigma_l | 1.970 | 1.970 | 1.947 | 1.947 | 1.947 | 1.970 | 1.970 | 1.947 |
| selectivity[trwlFSel_m].sigma_r | 61.523 | 61.523 | 200.000 | 200.000 | 200.000 | 61.523 | 61.523 | 200.000 |
| selectivity[trwlFSel_m].alpha | 1.043 | 1.043 | 1.021 | 1.021 | 1.021 | 1.043 | 1.043 | 1.021 |
| selectivity[trwlFSel_f].mu | 8.659 | 8.659 | 8.739 | 8.739 | 8.739 | 8.659 | 8.659 | 8.739 |
| selectivity[trwlFSel_f].sigma_l | 2.097 | 2.097 | 2.088 | 2.088 | 2.088 | 2.097 | 2.097 | 2.088 |
| selectivity[trwlFSel_f].sigma_r | 43.164 | 43.164 | 40.595 | 40.594 | 40.594 | 43.164 | 43.164 | 40.595 |
| selectivity[lineHomeFSel_m].a50 | 11.456 | 11.456 | 8.608 | 8.608 | 8.608 | 11.456 | 11.456 | 8.608 |
| selectivity[lineHomeFSel_m].ato95 | 8.600 | 8.600 | 4.592 | 4.592 | 4.592 | 8.600 | 8.600 | 4.592 |
| selectivity[lineHomeFSel_m].alpha | 0.380 | 0.380 | 0.270 | 0.270 | 0.270 | 0.380 | 0.380 | 0.270 |
| selectivity[lineHomeFSel_f].a50 | 9.615 | 9.615 | 9.534 | 9.534 | 9.534 | 9.615 | 9.615 | 9.534 |
| selectivity[lineHomeFSel_f].ato95 | 3.870 | 3.870 | 3.691 | 3.691 | 3.691 | 3.870 | 3.870 | 3.691 |
| selectivity[lineSpawnFSel_m].a50 | 18.215 | 18.215 | 14.047 | 14.047 | 14.047 | 18.215 | 18.215 | 14.047 |
| selectivity[lineSpawnFSel_m].ato95 | 13.600 | 13.600 | 10.026 | 10.026 | 10.026 | 13.600 | 13.600 | 10.026 |
| selectivity[lineSpawnFSel_m].alpha | 1.856 | 1.856 | 1.174 | 1.174 | 1.174 | 1.856 | 1.856 | 1.174 |
| selectivity[lineSpawnFSel_f].a50 | 9.739 | 9.739 | 9.715 | 9.715 | 9.715 | 9.739 | 9.739 | 9.715 |
| selectivity[lineSpawnFSel_f].ato95 | 2.994 | 2.994 | 2.897 | 2.897 | 2.897 | 2.994 | 2.994 | 2.897 |
| process[Recruitment].ycs_values{1972} | 0.484 | 0.484 | 0.466 | 0.466 | 0.466 | 0.484 | 0.484 | 0.466 |
| process[Recruitment].ycs_values{1973} | 0.461 | 0.461 | 0.450 | 0.450 | 0.450 | 0.461 | 0.461 | 0.450 |
| process[Recruitment].ycs_values{1974} | 0.568 | 0.568 | 0.565 | 0.565 | 0.565 | 0.568 | 0.568 | 0.565 |
| process[Recruitment].ycs_values{1975} | 0.567 | 0.567 | 0.567 | 0.567 | 0.567 | 0.567 | 0.567 | 0.567 |
| process[Recruitment].ycs_values{1976} | 0.486 | 0.486 | 0.491 | 0.491 | 0.491 | 0.486 | 0.486 | 0.491 |
| process[Recruitment].ycs_values{1977} | 0.554 | 0.554 | 0.567 | 0.567 | 0.567 | 0.554 | 0.554 | 0.567 |
| process[Recruitment].ycs_values{1978} | 0.563 | 0.563 | 0.579 | 0.579 | 0.579 | 0.563 | 0.563 | 0.579 |
| process[Recruitment].ycs_values{1979} | 0.689 | 0.689 | 0.711 | 0.711 | 0.711 | 0.689 | 0.689 | 0.711 |
| process[Recruitment].ycs_values{1980} | 0.621 | 0.621 | 0.636 | 0.636 | 0.636 | 0.621 | 0.621 | 0.636 |
| process[Recruitment].ycs_values{1981} | 0.792 | 0.792 | 0.808 | 0.808 | 0.808 | 0.792 | 0.792 | 0.808 |
| process[Recruitment].ycs_values{1982} | 0.465 | 0.465 | 0.469 | 0.469 | 0.469 | 0.465 | 0.465 | 0.469 |
| process[Recruitment].ycs_values{1983} | 0.700 | 0.700 | 0.707 | 0.707 | 0.707 | 0.700 | 0.700 | 0.707 |
| process[Recruitment].ycs_values{1984} | 0.410 | 0.410 | 0.410 | 0.410 | 0.410 | 0.410 | 0.410 | 0.410 |
| process[Recruitment].ycs_values{1985} | 0.515 | 0.515 | 0.515 | 0.515 | 0.515 | 0.515 | 0.515 | 0.515 |
| process[Recruitment].ycs_values{1986} | 0.341 | 0.341 | 0.342 | 0.342 | 0.342 | 0.341 | 0.341 | 0.342 |
| process[Recruitment].ycs_values{1987} | 0.348 | 0.348 | 0.347 | 0.347 | 0.347 | 0.348 | 0.348 | 0.347 |
| process[Recruitment].ycs_values{1988} | 0.438 | 0.438 | 0.438 | 0.438 | 0.438 | 0.438 | 0.438 | 0.438 |
| process[Recruitment].ycs_values{1989} | 0.479 | 0.479 | 0.475 | 0.475 | 0.475 | 0.479 | 0.479 | 0.475 |
| process[Recruitment].ycs_values{1990} | 0.452 | 0.452 | 0.451 | 0.451 | 0.451 | 0.452 | 0.452 | 0.451 |
| process[Recruitment].ycs_values{1991} | 0.493 | 0.493 | 0.495 | 0.495 | 0.495 | 0.493 | 0.493 | 0.495 |
| process[Recruitment].ycs_values{1992} | 0.469 | 0.469 | 0.471 | 0.471 | 0.471 | 0.469 | 0.469 | 0.471 |
| process[Recruitment].ycs_values{1993} | 0.798 | 0.798 | 0.805 | 0.805 | 0.805 | 0.798 | 0.798 | 0.805 |
| process[Recruitment].ycs_values{1994} | 0.791 | 0.791 | 0.792 | 0.792 | 0.792 | 0.791 | 0.791 | 0.792 |
| process[Recruitment].ycs_values{1995} | 0.825 | 0.825 | 0.831 | 0.831 | 0.831 | 0.825 | 0.825 | 0.831 |
| process[Recruitment].ycs_values{1996} | 0.707 | 0.707 | 0.712 | 0.712 | 0.712 | 0.707 | 0.707 | 0.712 |
| process[Recruitment].ycs_values{1997} | 0.552 | 0.552 | 0.554 | 0.554 | 0.554 | 0.552 | 0.552 | 0.554 |
| process[Recruitment].ycs_values{1998} | 0.475 | 0.475 | 0.477 | 0.477 | 0.477 | 0.475 | 0.475 | 0.477 |
| process[Recruitment].ycs_values{1999} | 0.461 | 0.461 | 0.461 | 0.461 | 0.461 | 0.461 | 0.461 | 0.461 |
| process[Recruitment].ycs_values{2000} | 0.556 | 0.556 | 0.554 | 0.554 | 0.554 | 0.556 | 0.556 | 0.554 |
| process[Recruitment].ycs_values{2001} | 0.545 | 0.545 | 0.542 | 0.542 | 0.542 | 0.545 | 0.545 | 0.542 |
| process[Recruitment].ycs_values{2002} | 0.484 | 0.484 | 0.483 | 0.483 | 0.483 | 0.484 | 0.484 | 0.483 |
| process[Recruitment].ycs_values{2003} | 0.550 | 0.550 | 0.550 | 0.550 | 0.550 | 0.550 | 0.550 | 0.550 |
| process[Recruitment].ycs_values{2004} | 0.614 | 0.614 | 0.616 | 0.616 | 0.616 | 0.614 | 0.614 | 0.616 |
| process[Recruitment].ycs_values{2005} | 0.777 | 0.777 | 0.775 | 0.775 | 0.775 | 0.777 | 0.777 | 0.775 |
| process[Recruitment].ycs_values{2006} | 0.631 | 0.631 | 0.631 | 0.631 | 0.631 | 0.631 | 0.631 | 0.631 |
| process[Recruitment].ycs_values{2007} | 0.774 | 0.774 | 0.773 | 0.773 | 0.773 | 0.774 | 0.774 | 0.773 |
| process[Recruitment].ycs_values{2008} | 0.643 | 0.643 | 0.639 | 0.639 | 0.639 | 0.643 | 0.643 | 0.639 |
| process[Recruitment].ycs_values{2009} | 0.706 | 0.706 | 0.699 | 0.699 | 0.699 | 0.706 | 0.706 | 0.699 |
| process[Recruitment].ycs_values{2010} | 0.653 | 0.653 | 0.649 | 0.649 | 0.649 | 0.653 | 0.653 | 0.649 |
| process[Recruitment].ycs_values{2011} | 0.511 | 0.511 | 0.506 | 0.506 | 0.506 | 0.511 | 0.511 | 0.506 |
| process[Recruitment].ycs_values{2012} | 0.586 | 0.586 | 0.587 | 0.587 | 0.587 | 0.586 | 0.586 | 0.587 |
| process[Recruitment].ycs_values{2013} | 0.601 | 0.601 | 0.589 | 0.589 | 0.589 | 0.601 | 0.601 | 0.589 |
| process[Recruitment].ycs_values{2014} | 0.576 | 0.576 | 0.574 | 0.574 | 0.574 | 0.576 | 0.576 | 0.574 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | cppad_casal_flags_on | cppad_casal_flags_off | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
| process[Recruitment].b0 | 0.000 | 0.000 | -0.664 | -0.663 | -0.663 | 0.000 | 0.000 | -0.664 |
| catchability[summerTANq].q | 0.000 | 0.000 | 0.344 | 0.344 | 0.344 | 0.000 | 0.000 | 0.344 |
| catchability[autumnTANq].q | 0.000 | 0.000 | 0.105 | 0.105 | 0.105 | 0.000 | 0.000 | 0.105 |
| selectivity[M_all].x0 | 0.000 | 0.000 | -3.904 | -3.904 | -3.904 | 0.000 | 0.000 | -3.904 |
| selectivity[M_all].y0 | 0.000 | 0.000 | 3.510 | 3.510 | 3.510 | 0.000 | 0.000 | 3.510 |
| selectivity[M_all].y1 | 0.000 | 0.000 | -16.840 | -16.841 | -16.841 | 0.000 | 0.000 | -16.840 |
| selectivity[M_all].y2 | 0.000 | 0.000 | -0.741 | -0.740 | -0.740 | 0.000 | 0.000 | -0.741 |
| selectivity[summerTANSel_m].a50 | 0.000 | 0.000 | -2.881 | -2.882 | -2.882 | 0.000 | 0.000 | -2.881 |
| selectivity[summerTANSel_m].ato95 | 0.000 | 0.000 | -1.473 | -1.473 | -1.473 | 0.000 | 0.000 | -1.473 |
| selectivity[summerTANSel_m].alpha | 0.000 | 0.000 | 1.329 | 1.329 | 1.329 | 0.000 | 0.000 | 1.329 |
| selectivity[summerTANSel_f].a50 | 0.000 | 0.000 | -2.691 | -2.691 | -2.691 | 0.000 | 0.000 | -2.691 |
| selectivity[summerTANSel_f].ato95 | 0.000 | 0.000 | -0.490 | -0.490 | -0.490 | 0.000 | 0.000 | -0.490 |
| selectivity[autumnTANSel_m].a50 | 0.000 | 0.000 | -2.358 | -2.358 | -2.358 | 0.000 | 0.000 | -2.358 |
| selectivity[autumnTANSel_m].ato95 | 0.000 | 0.000 | 0.644 | 0.644 | 0.644 | 0.000 | 0.000 | 0.644 |
| selectivity[autumnTANSel_m].alpha | 0.000 | 0.000 | 0.906 | 0.907 | 0.907 | 0.000 | 0.000 | 0.906 |
| selectivity[autumnTANSel_f].a50 | 0.000 | 0.000 | -2.413 | -2.413 | -2.413 | 0.000 | 0.000 | -2.413 |
| selectivity[autumnTANSel_f].ato95 | 0.000 | 0.000 | 1.146 | 1.146 | 1.146 | 0.000 | 0.000 | 1.146 |
| selectivity[trwlFSel_m].mu | 0.000 | 0.000 | -0.397 | -0.397 | -0.397 | 0.000 | 0.000 | -0.397 |
| selectivity[trwlFSel_m].sigma_l | 0.000 | 0.000 | 1.161 | 1.161 | 1.161 | 0.000 | 0.000 | 1.161 |
| selectivity[trwlFSel_m].sigma_r | 0.000 | 0.000 | -225.082 | -225.082 | -225.082 | 0.000 | 0.000 | -225.082 |
| selectivity[trwlFSel_m].alpha | 0.000 | 0.000 | 2.101 | 2.101 | 2.101 | 0.000 | 0.000 | 2.101 |
| selectivity[trwlFSel_f].mu | 0.000 | 0.000 | -0.935 | -0.935 | -0.935 | 0.000 | 0.000 | -0.935 |
| selectivity[trwlFSel_f].sigma_l | 0.000 | 0.000 | 0.385 | 0.385 | 0.385 | 0.000 | 0.000 | 0.385 |
| selectivity[trwlFSel_f].sigma_r | 0.000 | 0.000 | 5.952 | 5.954 | 5.954 | 0.000 | 0.000 | 5.952 |
| selectivity[lineHomeFSel_m].a50 | 0.000 | 0.000 | 24.857 | 24.858 | 24.858 | 0.000 | 0.000 | 24.857 |
| selectivity[lineHomeFSel_m].ato95 | 0.000 | 0.000 | 46.606 | 46.607 | 46.607 | 0.000 | 0.000 | 46.606 |
| selectivity[lineHomeFSel_m].alpha | 0.000 | 0.000 | 29.007 | 29.008 | 29.008 | 0.000 | 0.000 | 29.007 |
| selectivity[lineHomeFSel_f].a50 | 0.000 | 0.000 | 0.845 | 0.845 | 0.845 | 0.000 | 0.000 | 0.845 |
| selectivity[lineHomeFSel_f].ato95 | 0.000 | 0.000 | 4.638 | 4.638 | 4.638 | 0.000 | 0.000 | 4.638 |
| selectivity[lineSpawnFSel_m].a50 | 0.000 | 0.000 | 22.884 | 22.884 | 22.884 | 0.000 | 0.000 | 22.884 |
| selectivity[lineSpawnFSel_m].ato95 | 0.000 | 0.000 | 26.276 | 26.277 | 26.277 | 0.000 | 0.000 | 26.276 |
| selectivity[lineSpawnFSel_m].alpha | 0.000 | 0.000 | 36.731 | 36.731 | 36.731 | 0.000 | 0.000 | 36.731 |
| selectivity[lineSpawnFSel_f].a50 | 0.000 | 0.000 | 0.245 | 0.245 | 0.245 | 0.000 | 0.000 | 0.245 |
| selectivity[lineSpawnFSel_f].ato95 | 0.000 | 0.000 | 3.246 | 3.246 | 3.246 | 0.000 | 0.000 | 3.246 |
| process[Recruitment].ycs_values{1972} | 0.000 | 0.000 | 3.589 | 3.589 | 3.589 | 0.000 | 0.000 | 3.589 |
| process[Recruitment].ycs_values{1973} | 0.000 | 0.000 | 2.389 | 2.389 | 2.389 | 0.000 | 0.000 | 2.389 |
| process[Recruitment].ycs_values{1974} | 0.000 | 0.000 | 0.675 | 0.675 | 0.675 | 0.000 | 0.000 | 0.675 |
| process[Recruitment].ycs_values{1975} | 0.000 | 0.000 | -0.064 | -0.064 | -0.064 | 0.000 | 0.000 | -0.064 |
| process[Recruitment].ycs_values{1976} | 0.000 | 0.000 | -0.916 | -0.916 | -0.916 | 0.000 | 0.000 | -0.916 |
| process[Recruitment].ycs_values{1977} | 0.000 | 0.000 | -2.353 | -2.353 | -2.353 | 0.000 | 0.000 | -2.353 |
| process[Recruitment].ycs_values{1978} | 0.000 | 0.000 | -2.733 | -2.732 | -2.732 | 0.000 | 0.000 | -2.733 |
| process[Recruitment].ycs_values{1979} | 0.000 | 0.000 | -3.185 | -3.185 | -3.185 | 0.000 | 0.000 | -3.185 |
| process[Recruitment].ycs_values{1980} | 0.000 | 0.000 | -2.457 | -2.457 | -2.457 | 0.000 | 0.000 | -2.457 |
| process[Recruitment].ycs_values{1981} | 0.000 | 0.000 | -1.962 | -1.962 | -1.962 | 0.000 | 0.000 | -1.962 |
| process[Recruitment].ycs_values{1982} | 0.000 | 0.000 | -0.906 | -0.906 | -0.906 | 0.000 | 0.000 | -0.906 |
| process[Recruitment].ycs_values{1983} | 0.000 | 0.000 | -1.056 | -1.056 | -1.056 | 0.000 | 0.000 | -1.056 |
| process[Recruitment].ycs_values{1984} | 0.000 | 0.000 | -0.115 | -0.115 | -0.115 | 0.000 | 0.000 | -0.115 |
| process[Recruitment].ycs_values{1985} | 0.000 | 0.000 | 0.162 | 0.162 | 0.162 | 0.000 | 0.000 | 0.162 |
| process[Recruitment].ycs_values{1986} | 0.000 | 0.000 | -0.236 | -0.235 | -0.235 | 0.000 | 0.000 | -0.236 |
| process[Recruitment].ycs_values{1987} | 0.000 | 0.000 | 0.091 | 0.091 | 0.091 | 0.000 | 0.000 | 0.091 |
| process[Recruitment].ycs_values{1988} | 0.000 | 0.000 | -0.079 | -0.078 | -0.078 | 0.000 | 0.000 | -0.079 |
| process[Recruitment].ycs_values{1989} | 0.000 | 0.000 | 0.884 | 0.885 | 0.885 | 0.000 | 0.000 | 0.884 |
| process[Recruitment].ycs_values{1990} | 0.000 | 0.000 | 0.106 | 0.106 | 0.106 | 0.000 | 0.000 | 0.106 |
| process[Recruitment].ycs_values{1991} | 0.000 | 0.000 | -0.436 | -0.436 | -0.436 | 0.000 | 0.000 | -0.436 |
| process[Recruitment].ycs_values{1992} | 0.000 | 0.000 | -0.325 | -0.325 | -0.325 | 0.000 | 0.000 | -0.325 |
| process[Recruitment].ycs_values{1993} | 0.000 | 0.000 | -0.871 | -0.871 | -0.871 | 0.000 | 0.000 | -0.871 |
| process[Recruitment].ycs_values{1994} | 0.000 | 0.000 | -0.102 | -0.102 | -0.102 | 0.000 | 0.000 | -0.102 |
| process[Recruitment].ycs_values{1995} | 0.000 | 0.000 | -0.691 | -0.691 | -0.691 | 0.000 | 0.000 | -0.691 |
| process[Recruitment].ycs_values{1996} | 0.000 | 0.000 | -0.736 | -0.736 | -0.736 | 0.000 | 0.000 | -0.736 |
| process[Recruitment].ycs_values{1997} | 0.000 | 0.000 | -0.400 | -0.400 | -0.400 | 0.000 | 0.000 | -0.400 |
| process[Recruitment].ycs_values{1998} | 0.000 | 0.000 | -0.368 | -0.368 | -0.368 | 0.000 | 0.000 | -0.368 |
| process[Recruitment].ycs_values{1999} | 0.000 | 0.000 | -0.045 | -0.045 | -0.045 | 0.000 | 0.000 | -0.045 |
| process[Recruitment].ycs_values{2000} | 0.000 | 0.000 | 0.239 | 0.239 | 0.239 | 0.000 | 0.000 | 0.239 |
| process[Recruitment].ycs_values{2001} | 0.000 | 0.000 | 0.623 | 0.623 | 0.623 | 0.000 | 0.000 | 0.623 |
| process[Recruitment].ycs_values{2002} | 0.000 | 0.000 | 0.227 | 0.227 | 0.227 | 0.000 | 0.000 | 0.227 |
| process[Recruitment].ycs_values{2003} | 0.000 | 0.000 | -0.008 | -0.007 | -0.007 | 0.000 | 0.000 | -0.008 |
| process[Recruitment].ycs_values{2004} | 0.000 | 0.000 | -0.260 | -0.260 | -0.260 | 0.000 | 0.000 | -0.260 |
| process[Recruitment].ycs_values{2005} | 0.000 | 0.000 | 0.321 | 0.321 | 0.321 | 0.000 | 0.000 | 0.321 |
| process[Recruitment].ycs_values{2006} | 0.000 | 0.000 | 0.123 | 0.124 | 0.124 | 0.000 | 0.000 | 0.123 |
| process[Recruitment].ycs_values{2007} | 0.000 | 0.000 | 0.042 | 0.042 | 0.042 | 0.000 | 0.000 | 0.042 |
| process[Recruitment].ycs_values{2008} | 0.000 | 0.000 | 0.503 | 0.503 | 0.503 | 0.000 | 0.000 | 0.503 |
| process[Recruitment].ycs_values{2009} | 0.000 | 0.000 | 1.010 | 1.010 | 1.010 | 0.000 | 0.000 | 1.010 |
| process[Recruitment].ycs_values{2010} | 0.000 | 0.000 | 0.674 | 0.675 | 0.675 | 0.000 | 0.000 | 0.674 |
| process[Recruitment].ycs_values{2011} | 0.000 | 0.000 | 1.004 | 1.004 | 1.004 | 0.000 | 0.000 | 1.004 |
| process[Recruitment].ycs_values{2012} | 0.000 | 0.000 | -0.311 | -0.311 | -0.311 | 0.000 | 0.000 | -0.311 |
| process[Recruitment].ycs_values{2013} | 0.000 | 0.000 | 1.918 | 1.919 | 1.919 | 0.000 | 0.000 | 1.918 |
| process[Recruitment].ycs_values{2014} | 0.000 | 0.000 | 0.262 | 0.265 | 0.265 | 0.000 | 0.000 | 0.262 |
| Component | Base_Model | Sensitivity_1 |
| Tangaroa_bio_autumn | -6.829 | -6.834 |
| Tangaroa_bio_summer | -23.884 | -23.962 |
| Tangaroa_propn_at_age_aut | 175.718 | 175.789 |
| Tangaroa_propn_at_age_summer | 835.903 | 835.602 |
| longline_Campbell_home_propn_at_age | 275.676 | 275.416 |
| longline_Puysegur_spawn_propn_at_age | 363.279 | 363.252 |
| trawl_observer_propn_at_age | 682.612 | 682.293 |
| prior_on_q[tan_sum].q | -2.364 | -2.366 |
| prior_on_q[tan_aut].q | -2.033 | -2.037 |
| prior_on_initialization.B0 | 12.641 | 12.646 |
| prior_on_natural_mortality.ogive_all | 0.000 | 0.000 |
| prior_on_selectivity[surveysum_sel].male | 0.000 | 0.000 |
| prior_on_selectivity[surveysum_sel].female | 0.000 | 0.000 |
| prior_on_selectivity[surveyaut_sel].male | 0.000 | 0.000 |
| prior_on_selectivity[surveyaut_sel].female | 0.000 | 0.000 |
| prior_on_selectivity[trawl_sel].male | 0.000 | 0.000 |
| prior_on_selectivity[trawl_sel].female | 0.000 | 0.000 |
| prior_on_selectivity[line_home_sel].male | 0.000 | 0.000 |
| prior_on_selectivity[line_home_sel].female | 0.000 | 0.000 |
| prior_on_selectivity[line_spawn_sel].male | 0.000 | 0.000 |
| prior_on_selectivity[line_spawn_sel].female | 0.000 | 0.000 |
| prior_on_recruitment.YCS | -14.441 | -14.366 |
| clp1 | 0.000 | 0.000 |
| clp2 | 0.000 | 0.000 |
| clp3 | 0.000 | 0.000 |
| YCS_average_1 | 0.908 | 0.903 |
| Total | 2297.190 | 2296.340 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | cppad_casal_flags_on | cppad_casal_flags_off | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
| observation->summerTANbiomass-1992 | -1.693 | -1.693 | -1.679 | -1.679 | -1.679 | -1.693 | -1.693 | -1.679 |
| observation->summerTANbiomass-1993 | -1.353 | -1.353 | -1.331 | -1.331 | -1.331 | -1.353 | -1.353 | -1.331 |
| observation->summerTANbiomass-1994 | -0.975 | -0.975 | -0.991 | -0.991 | -0.991 | -0.975 | -0.975 | -0.991 |
| observation->summerTANbiomass-2001 | 0.430 | 0.430 | 0.354 | 0.354 | 0.354 | 0.430 | 0.430 | 0.354 |
| observation->summerTANbiomass-2002 | -1.778 | -1.778 | -1.786 | -1.786 | -1.786 | -1.778 | -1.778 | -1.786 |
| observation->summerTANbiomass-2003 | -1.685 | -1.685 | -1.693 | -1.693 | -1.693 | -1.685 | -1.685 | -1.693 |
| observation->summerTANbiomass-2004 | -1.598 | -1.598 | -1.586 | -1.586 | -1.586 | -1.598 | -1.598 | -1.586 |
| observation->summerTANbiomass-2005 | -1.657 | -1.657 | -1.656 | -1.656 | -1.656 | -1.657 | -1.657 | -1.656 |
| observation->summerTANbiomass-2006 | -1.143 | -1.143 | -1.153 | -1.153 | -1.153 | -1.143 | -1.143 | -1.153 |
| observation->summerTANbiomass-2007 | -1.162 | -1.162 | -1.180 | -1.180 | -1.180 | -1.162 | -1.162 | -1.180 |
| observation->summerTANbiomass-2008 | -1.568 | -1.568 | -1.553 | -1.553 | -1.553 | -1.568 | -1.568 | -1.553 |
| observation->summerTANbiomass-2009 | -1.700 | -1.700 | -1.705 | -1.705 | -1.705 | -1.700 | -1.700 | -1.705 |
| observation->summerTANbiomass-2010 | -1.672 | -1.672 | -1.678 | -1.678 | -1.678 | -1.672 | -1.672 | -1.678 |
| observation->summerTANbiomass-2012 | -1.554 | -1.554 | -1.558 | -1.558 | -1.558 | -1.554 | -1.554 | -1.558 |
| observation->summerTANbiomass-2013 | -1.669 | -1.669 | -1.667 | -1.667 | -1.667 | -1.669 | -1.669 | -1.667 |
| observation->summerTANbiomass-2015 | -1.582 | -1.582 | -1.570 | -1.570 | -1.570 | -1.582 | -1.582 | -1.570 |
| observation->summerTANbiomass-2017 | -1.526 | -1.526 | -1.528 | -1.528 | -1.528 | -1.526 | -1.526 | -1.528 |
| observation->Tangaroa_propn_at_age_summer-1990 | 44.218 | 44.218 | 44.393 | 44.393 | 44.393 | 44.218 | 44.218 | 44.393 |
| observation->Tangaroa_propn_at_age_summer-1992 | 51.993 | 51.993 | 51.753 | 51.753 | 51.753 | 51.993 | 51.993 | 51.753 |
| observation->Tangaroa_propn_at_age_summer-1993 | 50.200 | 50.200 | 50.168 | 50.168 | 50.168 | 50.200 | 50.200 | 50.168 |
| observation->Tangaroa_propn_at_age_summer-1994 | 49.743 | 49.743 | 49.785 | 49.785 | 49.785 | 49.743 | 49.743 | 49.785 |
| observation->Tangaroa_propn_at_age_summer-2001 | 48.355 | 48.355 | 48.237 | 48.237 | 48.237 | 48.355 | 48.355 | 48.237 |
| observation->Tangaroa_propn_at_age_summer-2002 | 47.830 | 47.830 | 47.879 | 47.879 | 47.879 | 47.830 | 47.830 | 47.879 |
| observation->Tangaroa_propn_at_age_summer-2003 | 48.442 | 48.442 | 48.620 | 48.620 | 48.620 | 48.442 | 48.442 | 48.620 |
| observation->Tangaroa_propn_at_age_summer-2004 | 44.823 | 44.823 | 44.865 | 44.865 | 44.865 | 44.823 | 44.823 | 44.865 |
| observation->Tangaroa_propn_at_age_summer-2005 | 43.097 | 43.097 | 43.117 | 43.117 | 43.117 | 43.097 | 43.097 | 43.117 |
| observation->Tangaroa_propn_at_age_summer-2006 | 43.891 | 43.891 | 44.058 | 44.058 | 44.058 | 43.891 | 43.891 | 44.058 |
| observation->Tangaroa_propn_at_age_summer-2007 | 41.848 | 41.848 | 41.841 | 41.841 | 41.841 | 41.848 | 41.848 | 41.841 |
| observation->Tangaroa_propn_at_age_summer-2008 | 45.225 | 45.225 | 45.267 | 45.267 | 45.267 | 45.225 | 45.225 | 45.267 |
| observation->Tangaroa_propn_at_age_summer-2009 | 46.844 | 46.844 | 46.806 | 46.806 | 46.806 | 46.844 | 46.844 | 46.806 |
| observation->Tangaroa_propn_at_age_summer-2010 | 47.128 | 47.128 | 47.202 | 47.202 | 47.202 | 47.128 | 47.128 | 47.202 |
| observation->Tangaroa_propn_at_age_summer-2012 | 44.353 | 44.353 | 44.183 | 44.183 | 44.183 | 44.353 | 44.353 | 44.183 |
| observation->Tangaroa_propn_at_age_summer-2013 | 47.251 | 47.251 | 47.021 | 47.021 | 47.021 | 47.251 | 47.251 | 47.021 |
| observation->Tangaroa_propn_at_age_summer-2015 | 46.473 | 46.473 | 46.342 | 46.342 | 46.342 | 46.473 | 46.473 | 46.342 |
| observation->Tangaroa_propn_at_age_summer-2017 | 44.182 | 44.182 | 44.082 | 44.082 | 44.082 | 44.182 | 44.182 | 44.082 |
| observation->autumnTANbiomass-1992 | -1.558 | -1.558 | -1.572 | -1.572 | -1.572 | -1.558 | -1.558 | -1.572 |
| observation->autumnTANbiomass-1993 | -1.741 | -1.741 | -1.733 | -1.733 | -1.733 | -1.741 | -1.741 | -1.733 |
| observation->autumnTANbiomass-1996 | -1.779 | -1.779 | -1.779 | -1.779 | -1.779 | -1.779 | -1.779 | -1.779 |
| observation->autumnTANbiomass-1998 | -1.750 | -1.750 | -1.750 | -1.750 | -1.750 | -1.750 | -1.750 | -1.750 |
| observation->Tangaroa_propn_at_age_autumn-1992 | 44.589 | 44.589 | 44.443 | 44.443 | 44.443 | 44.589 | 44.589 | 44.443 |
| observation->Tangaroa_propn_at_age_autumn-1993 | 45.484 | 45.484 | 45.443 | 45.443 | 45.443 | 45.484 | 45.484 | 45.443 |
| observation->Tangaroa_propn_at_age_autumn-1996 | 42.184 | 42.184 | 42.295 | 42.295 | 42.295 | 42.184 | 42.184 | 42.295 |
| observation->Tangaroa_propn_at_age_autumn-1998 | 43.464 | 43.464 | 43.610 | 43.610 | 43.610 | 43.464 | 43.464 | 43.610 |
| observation->trawl_propn_at_age-1992 | 36.067 | 36.067 | 35.944 | 35.944 | 35.944 | 36.067 | 36.067 | 35.944 |
| observation->trawl_propn_at_age-1993 | 27.516 | 27.516 | 27.476 | 27.476 | 27.476 | 27.516 | 27.516 | 27.476 |
| observation->trawl_propn_at_age-1994 | 25.819 | 25.819 | 25.764 | 25.764 | 25.764 | 25.819 | 25.819 | 25.764 |
| observation->trawl_propn_at_age-1996 | 28.394 | 28.394 | 28.397 | 28.397 | 28.397 | 28.394 | 28.394 | 28.397 |
| observation->trawl_propn_at_age-1998 | 24.915 | 24.915 | 24.910 | 24.910 | 24.910 | 24.915 | 24.915 | 24.910 |
| observation->trawl_propn_at_age-2001 | 24.580 | 24.580 | 24.542 | 24.542 | 24.542 | 24.580 | 24.580 | 24.542 |
| observation->trawl_propn_at_age-2002 | 26.770 | 26.770 | 26.792 | 26.792 | 26.792 | 26.770 | 26.770 | 26.792 |
| observation->trawl_propn_at_age-2003 | 34.564 | 34.564 | 34.511 | 34.511 | 34.511 | 34.564 | 34.564 | 34.511 |
| observation->trawl_propn_at_age-2004 | 29.608 | 29.608 | 29.608 | 29.608 | 29.608 | 29.608 | 29.608 | 29.608 |
| observation->trawl_propn_at_age-2005 | 30.147 | 30.147 | 30.166 | 30.166 | 30.166 | 30.147 | 30.147 | 30.166 |
| observation->trawl_propn_at_age-2006 | 33.629 | 33.629 | 33.714 | 33.714 | 33.714 | 33.629 | 33.629 | 33.714 |
| observation->trawl_propn_at_age-2007 | 26.635 | 26.635 | 26.588 | 26.588 | 26.588 | 26.635 | 26.635 | 26.588 |
| observation->trawl_propn_at_age-2008 | 27.059 | 27.059 | 27.076 | 27.076 | 27.076 | 27.059 | 27.059 | 27.076 |
| observation->trawl_propn_at_age-2009 | 37.213 | 37.213 | 37.237 | 37.237 | 37.237 | 37.213 | 37.213 | 37.237 |
| observation->trawl_propn_at_age-2010 | 30.648 | 30.648 | 30.694 | 30.694 | 30.694 | 30.648 | 30.648 | 30.694 |
| observation->trawl_propn_at_age-2011 | 31.266 | 31.266 | 31.260 | 31.260 | 31.260 | 31.266 | 31.266 | 31.260 |
| observation->trawl_propn_at_age-2012 | 32.325 | 32.325 | 32.366 | 32.366 | 32.366 | 32.325 | 32.325 | 32.366 |
| observation->trawl_propn_at_age-2013 | 37.072 | 37.072 | 36.943 | 36.943 | 36.943 | 37.072 | 37.072 | 36.943 |
| observation->trawl_propn_at_age-2014 | 30.640 | 30.640 | 30.642 | 30.642 | 30.642 | 30.640 | 30.640 | 30.642 |
| observation->trawl_propn_at_age-2015 | 33.456 | 33.456 | 33.474 | 33.474 | 33.474 | 33.456 | 33.456 | 33.474 |
| observation->trawl_propn_at_age-2016 | 36.532 | 36.532 | 36.482 | 36.482 | 36.482 | 36.532 | 36.532 | 36.482 |
| observation->trawl_propn_at_age-2017 | 37.755 | 37.755 | 37.708 | 37.708 | 37.708 | 37.755 | 37.755 | 37.708 |
| observation->longline_Campbell_home_propn_at_age-1999 | 45.348 | 45.348 | 45.256 | 45.256 | 45.256 | 45.348 | 45.348 | 45.256 |
| observation->longline_Campbell_home_propn_at_age-2001 | 31.965 | 31.965 | 31.950 | 31.950 | 31.950 | 31.965 | 31.965 | 31.950 |
| observation->longline_Campbell_home_propn_at_age-2003 | 28.644 | 28.644 | 28.675 | 28.675 | 28.675 | 28.644 | 28.644 | 28.675 |
| observation->longline_Campbell_home_propn_at_age-2005 | 32.750 | 32.750 | 32.776 | 32.776 | 32.776 | 32.750 | 32.750 | 32.776 |
| observation->longline_Campbell_home_propn_at_age-2009 | 26.033 | 26.033 | 25.611 | 25.611 | 25.611 | 26.033 | 26.033 | 25.611 |
| observation->longline_Campbell_home_propn_at_age-2010 | 24.302 | 24.302 | 24.461 | 24.461 | 24.461 | 24.302 | 24.302 | 24.461 |
| observation->longline_Campbell_home_propn_at_age-2011 | 28.878 | 28.878 | 28.935 | 28.935 | 28.935 | 28.878 | 28.878 | 28.935 |
| observation->longline_Campbell_home_propn_at_age-2012 | 32.258 | 32.258 | 32.389 | 32.389 | 32.389 | 32.258 | 32.258 | 32.389 |
| observation->longline_Campbell_home_propn_at_age-2014 | 25.495 | 25.495 | 25.357 | 25.357 | 25.357 | 25.495 | 25.495 | 25.357 |
| observation->longline_Puyseger_home_propn_at_age-2000 | 42.745 | 42.745 | 42.680 | 42.680 | 42.680 | 42.745 | 42.745 | 42.680 |
| observation->longline_Puyseger_home_propn_at_age-2001 | 31.770 | 31.770 | 31.900 | 31.900 | 31.900 | 31.770 | 31.770 | 31.900 |
| observation->longline_Puyseger_home_propn_at_age-2002 | 39.978 | 39.978 | 39.998 | 39.998 | 39.998 | 39.978 | 39.978 | 39.998 |
| observation->longline_Puyseger_home_propn_at_age-2003 | 43.527 | 43.527 | 43.511 | 43.511 | 43.511 | 43.527 | 43.527 | 43.511 |
| observation->longline_Puyseger_home_propn_at_age-2004 | 39.957 | 39.957 | 40.015 | 40.015 | 40.015 | 39.957 | 39.957 | 40.015 |
| observation->longline_Puyseger_home_propn_at_age-2005 | 25.532 | 25.532 | 25.358 | 25.358 | 25.358 | 25.532 | 25.532 | 25.358 |
| observation->longline_Puyseger_home_propn_at_age-2006 | 35.210 | 35.210 | 35.426 | 35.426 | 35.426 | 35.210 | 35.210 | 35.426 |
| observation->longline_Puyseger_home_propn_at_age-2007 | 33.981 | 33.981 | 33.782 | 33.782 | 33.782 | 33.981 | 33.981 | 33.782 |
| observation->longline_Puyseger_home_propn_at_age-2008 | 19.139 | 19.139 | 19.113 | 19.113 | 19.113 | 19.139 | 19.139 | 19.113 |
| observation->longline_Puyseger_home_propn_at_age-2010 | 24.238 | 24.238 | 24.366 | 24.366 | 24.366 | 24.238 | 24.238 | 24.366 |
| observation->longline_Puyseger_home_propn_at_age-2017 | 27.200 | 27.200 | 27.093 | 27.093 | 27.093 | 27.200 | 27.200 | 27.093 |
| prior->B0->process[Recruitment].b0 | 12.640 | 12.640 | 12.646 | 12.646 | 12.646 | 12.640 | 12.640 | 12.646 |
| prior->summerTANq->catchability[summerTANq].q | -2.363 | -2.363 | -2.365 | -2.365 | -2.365 | -2.363 | -2.363 | -2.365 |
| prior->autumnTANq->catchability[autumnTANq].q | -2.035 | -2.035 | -2.037 | -2.037 | -2.037 | -2.035 | -2.035 | -2.037 |
| prior->M_all_x0->selectivity[M_all].x0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->M_all_y0->selectivity[M_all].y0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->M_all_y1->selectivity[M_all].y1 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->M_all_y2->selectivity[M_all].y2 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[summerTANSel_m].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[summerTANSel_m].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[summerTANSel_m].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[summerTANSel_f].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[summerTANSel_f].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[autumnTANSel_m].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[autumnTANSel_m].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[autumnTANSel_m].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[autumnTANSel_f].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[autumnTANSel_f].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_m].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_m].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_m].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_m].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_f].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_f].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_f].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineHomeFSel_m].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineHomeFSel_m].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineHomeFSel_m].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineHomeFSel_f].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineHomeFSel_f].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineSpawnFSel_m].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineSpawnFSel_m].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineSpawnFSel_m].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineSpawnFSel_f].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineSpawnFSel_f].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->process[Recruitment].ycs_values{1972} | -0.378 | -0.378 | -0.365 | -0.365 | -0.365 | -0.378 | -0.378 | -0.365 |
| prior->process[Recruitment].ycs_values{1973} | -0.360 | -0.360 | -0.349 | -0.349 | -0.349 | -0.360 | -0.360 | -0.349 |
| prior->process[Recruitment].ycs_values{1974} | -0.397 | -0.397 | -0.398 | -0.398 | -0.398 | -0.397 | -0.397 | -0.398 |
| prior->process[Recruitment].ycs_values{1975} | -0.398 | -0.398 | -0.398 | -0.398 | -0.398 | -0.398 | -0.398 | -0.398 |
| prior->process[Recruitment].ycs_values{1976} | -0.380 | -0.380 | -0.383 | -0.383 | -0.383 | -0.380 | -0.380 | -0.383 |
| prior->process[Recruitment].ycs_values{1977} | -0.399 | -0.399 | -0.398 | -0.398 | -0.398 | -0.399 | -0.399 | -0.398 |
| prior->process[Recruitment].ycs_values{1978} | -0.398 | -0.398 | -0.396 | -0.396 | -0.396 | -0.398 | -0.398 | -0.396 |
| prior->process[Recruitment].ycs_values{1979} | -0.335 | -0.335 | -0.316 | -0.316 | -0.316 | -0.335 | -0.335 | -0.316 |
| prior->process[Recruitment].ycs_values{1980} | -0.380 | -0.380 | -0.372 | -0.372 | -0.372 | -0.380 | -0.380 | -0.372 |
| prior->process[Recruitment].ycs_values{1981} | -0.231 | -0.231 | -0.213 | -0.213 | -0.213 | -0.231 | -0.231 | -0.213 |
| prior->process[Recruitment].ycs_values{1982} | -0.364 | -0.364 | -0.367 | -0.367 | -0.367 | -0.364 | -0.364 | -0.367 |
| prior->process[Recruitment].ycs_values{1983} | -0.326 | -0.326 | -0.319 | -0.319 | -0.319 | -0.326 | -0.326 | -0.319 |
| prior->process[Recruitment].ycs_values{1984} | -0.291 | -0.291 | -0.292 | -0.292 | -0.292 | -0.291 | -0.291 | -0.292 |
| prior->process[Recruitment].ycs_values{1985} | -0.394 | -0.394 | -0.393 | -0.393 | -0.393 | -0.394 | -0.394 | -0.393 |
| prior->process[Recruitment].ycs_values{1986} | -0.114 | -0.114 | -0.117 | -0.117 | -0.117 | -0.114 | -0.114 | -0.117 |
| prior->process[Recruitment].ycs_values{1987} | -0.135 | -0.135 | -0.134 | -0.134 | -0.134 | -0.135 | -0.135 | -0.134 |
| prior->process[Recruitment].ycs_values{1988} | -0.334 | -0.334 | -0.334 | -0.334 | -0.334 | -0.334 | -0.334 | -0.334 |
| prior->process[Recruitment].ycs_values{1989} | -0.375 | -0.375 | -0.372 | -0.372 | -0.372 | -0.375 | -0.375 | -0.372 |
| prior->process[Recruitment].ycs_values{1990} | -0.350 | -0.350 | -0.350 | -0.350 | -0.350 | -0.350 | -0.350 | -0.350 |
| prior->process[Recruitment].ycs_values{1991} | -0.384 | -0.384 | -0.385 | -0.385 | -0.385 | -0.384 | -0.384 | -0.385 |
| prior->process[Recruitment].ycs_values{1992} | -0.367 | -0.367 | -0.369 | -0.369 | -0.369 | -0.367 | -0.367 | -0.369 |
| prior->process[Recruitment].ycs_values{1993} | -0.225 | -0.225 | -0.217 | -0.217 | -0.217 | -0.225 | -0.225 | -0.217 |
| prior->process[Recruitment].ycs_values{1994} | -0.233 | -0.233 | -0.232 | -0.232 | -0.232 | -0.233 | -0.233 | -0.232 |
| prior->process[Recruitment].ycs_values{1995} | -0.192 | -0.192 | -0.185 | -0.185 | -0.185 | -0.192 | -0.192 | -0.185 |
| prior->process[Recruitment].ycs_values{1996} | -0.319 | -0.319 | -0.315 | -0.315 | -0.315 | -0.319 | -0.319 | -0.315 |
| prior->process[Recruitment].ycs_values{1997} | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 |
| prior->process[Recruitment].ycs_values{1998} | -0.372 | -0.372 | -0.373 | -0.373 | -0.373 | -0.372 | -0.372 | -0.373 |
| prior->process[Recruitment].ycs_values{1999} | -0.360 | -0.360 | -0.360 | -0.360 | -0.360 | -0.360 | -0.360 | -0.360 |
| prior->process[Recruitment].ycs_values{2000} | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 |
| prior->process[Recruitment].ycs_values{2001} | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 |
| prior->process[Recruitment].ycs_values{2002} | -0.378 | -0.378 | -0.377 | -0.377 | -0.377 | -0.378 | -0.378 | -0.377 |
| prior->process[Recruitment].ycs_values{2003} | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 |
| prior->process[Recruitment].ycs_values{2004} | -0.383 | -0.383 | -0.383 | -0.383 | -0.383 | -0.383 | -0.383 | -0.383 |
| prior->process[Recruitment].ycs_values{2005} | -0.249 | -0.249 | -0.251 | -0.251 | -0.251 | -0.249 | -0.249 | -0.251 |
| prior->process[Recruitment].ycs_values{2006} | -0.375 | -0.375 | -0.375 | -0.375 | -0.375 | -0.375 | -0.375 | -0.375 |
| prior->process[Recruitment].ycs_values{2007} | -0.252 | -0.252 | -0.253 | -0.253 | -0.253 | -0.252 | -0.252 | -0.253 |
| prior->process[Recruitment].ycs_values{2008} | -0.368 | -0.368 | -0.370 | -0.370 | -0.370 | -0.368 | -0.368 | -0.370 |
| prior->process[Recruitment].ycs_values{2009} | -0.320 | -0.320 | -0.326 | -0.326 | -0.326 | -0.320 | -0.320 | -0.326 |
| prior->process[Recruitment].ycs_values{2010} | -0.362 | -0.362 | -0.364 | -0.364 | -0.364 | -0.362 | -0.362 | -0.364 |
| prior->process[Recruitment].ycs_values{2011} | -0.392 | -0.392 | -0.390 | -0.390 | -0.390 | -0.392 | -0.392 | -0.390 |
| prior->process[Recruitment].ycs_values{2012} | -0.394 | -0.394 | -0.393 | -0.393 | -0.393 | -0.394 | -0.394 | -0.393 |
| prior->process[Recruitment].ycs_values{2013} | -0.389 | -0.389 | -0.393 | -0.393 | -0.393 | -0.389 | -0.389 | -0.393 |
| prior->process[Recruitment].ycs_values{2014} | -0.396 | -0.396 | -0.396 | -0.396 | -0.396 | -0.396 | -0.396 | -0.396 |
| additional_prior->YCS_average_1 | 0.908 | 0.908 | 0.904 | 0.904 | 0.904 | 0.908 | 0.908 | 0.904 |
| total_score | 2296.970 | 2296.970 | 2296.140 | 2296.140 | 2296.140 | 2296.970 | 2296.970 | 2296.140 |
## [1] "CASAL base model convergence information"
## [1] "fmm: have converged: t = 0.00198541 f = 2297.19"
## [2] "Successful convergence in optimise"
## [3] "Minimiser achieved convergence after 53 quasi-Newton iterations using 91 objective function evaluations"
## [1] ""
## [1] "CASAL sensitivity 1 model convergence information"
## [1] "Minimiser convergence threshold: 1e-06"
## [2] "fmm: have converged: t = 9.43571e-07 f = 2296.34"
## [3] "Successful convergence in optimise"
## [4] "Minimiser achieved convergence after 197 quasi-Newton iterations using 312 objective function evaluations"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model convergence information"
## [1] "fmm: have converged: t = 0.00158129 f = 2296.97"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model convergence information"
## [1] "fmm: have converged: t = 0.00158129 f = 2296.97"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model convergence information"
## [1] "fmm: have converged: t = 4.70876e-07 f = 2296.14"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 cppad_casal_flags_on model convergence information"
## [1] "Number of nonzeros in equality constraint Jacobian...: 0"
## [2] "Number of nonzeros in inequality constraint Jacobian.: 77"
## [3] "Number of nonzeros in Lagrangian Hessian.............: 3003"
## [4] "Number of Iterations....: 29"
## [5] "Number of objective function evaluations = 52"
## [6] "Number of objective gradient evaluations = 30"
## [7] "Number of equality constraint evaluations = 0"
## [8] "Number of inequality constraint evaluations = 52"
## [9] "Number of equality constraint Jacobian evaluations = 0"
## [10] "Number of inequality constraint Jacobian evaluations = 30"
## [11] "Number of Lagrangian Hessian evaluations = 29"
## [12] "EXIT: Optimal Solution Found."
## [1] ""
## [1] "Casal2 cppad_casal_flags_off model convergence information"
## [1] "Number of nonzeros in equality constraint Jacobian...: 0"
## [2] "Number of nonzeros in inequality constraint Jacobian.: 77"
## [3] "Number of nonzeros in Lagrangian Hessian.............: 3003"
## [4] "Number of Iterations....: 29"
## [5] "Number of objective function evaluations = 52"
## [6] "Number of objective gradient evaluations = 30"
## [7] "Number of equality constraint evaluations = 0"
## [8] "Number of inequality constraint evaluations = 52"
## [9] "Number of equality constraint Jacobian evaluations = 0"
## [10] "Number of inequality constraint Jacobian evaluations = 30"
## [11] "Number of Lagrangian Hessian evaluations = 29"
## [12] "EXIT: Optimal Solution Found."
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model convergence information"
## character(0)
## [1] "CASAL base model warnings"
## NULL
## [1] ""
## [1] "CASAL sensitivity 1 model warnings"
## parameter estimate lower.bound upper.bound
## 1 selectivity[trawl_sel].male[3] 200 1 200
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model warnings"
## NULL
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model warnings"
## NULL
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model warnings"
## $warnings_found
## [1] 1
##
## $warning_0
## [1] "estimated parameter 'selectivity[trwlFSel_m].sigma_r' was within 0.001 of upper bound 200"
##
## $type
## [1] "warnings"
##
## [1] ""
## [1] "Casal2 cppad_casal_flags_on model warnings"
## $warnings_found
## [1] 1
##
## $warning_0
## [1] "estimated parameter 'selectivity[trwlFSel_m].sigma_r' was within 0.001 of upper bound 200"
##
## $type
## [1] "warnings"
##
## [1] ""
## [1] "Casal2 cppad_casal_flags_off model warnings"
## $warnings_found
## [1] 1
##
## $warning_0
## [1] "estimated parameter 'selectivity[trwlFSel_m].sigma_r' was within 0.001 of upper bound 200"
##
## $type
## [1] "warnings"
##
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model warnings"
## NULL
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model warnings"
## NULL
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model warnings"
## $warnings_found
## [1] 1
##
## $warning_0
## [1] "estimated parameter 'selectivity[trwlFSel_m].sigma_r' was within 0.001 of upper bound 200"
##
## $type
## [1] "warnings"
Time series comparisons with CASAL base model results
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run cppad_casal_flags_on"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run cppad_casal_flags_off"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
Derived quantities
SB0, SBcurrent, MSY, F_MSY, others…
Comparison plots
## [1] "CASAL base parameter correlation range (excluding 1.0): -0.735942 0.9329"
## [1] "CASAL sensitivity 1 parameter correlation range (excluding 1.0): -0.986887 0.996747"
## [1] "Casal2 betadiff_casal_flags_on parameter correlation range (excluding 1.0): -0.762745537546469 0.932179473694354"
## [1] "Casal2 betadiff_casal_flags_off parameter correlation range (excluding 1.0): -0.762745537546469 0.932179473694354"
## [1] "Casal2 betadiff_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.98942900392945 0.979130660174252"
## [1] "Casal2 cppad_casal_flags_on parameter correlation range (excluding 1.0): -0.98942900392945 0.979130660174252"
## [1] "Casal2 cppad_casal_flags_off parameter correlation range (excluding 1.0): -0.98942900392945 0.979130660174252"
## [1] "Casal2 adolc_casal_flags_on parameter correlation range (excluding 1.0): -0.762745537546469 0.932179473694354"
## [1] "Casal2 adolc_casal_flags_off parameter correlation range (excluding 1.0): -0.762745537546469 0.932179473694354"
## [1] "Casal2 adolc_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.98942900392945 0.979130660174252"